Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs6863548 chr5:131575920 G/A 1.14E-6 394 21.38 17.17 14.18 KM Plot
BLCA rs6867282 chr5:131583120 G/C 4.67E-6 404 21.32 17.67 14.27 KM Plot
BLCA rs6871350 chr5:131580220 A/G 2.96E-6 405 21.27 17.87 14.37 KM Plot
BLCA rs6890009 chr5:131580033 G/T 3.27E-7 405 21.38 17.4 14.02 KM Plot
BLCA rs7034776 chr9:25718023 C/T 9.1E-15 405 17.23 18.78 2.07 KM Plot
BLCA rs71583465 chr5:131594628 G/C 2.1E-6 401 19.27 19.13 14.22 KM Plot
BLCA rs71594952 chr5:3457718 T/C 1.36E-5 400 17.4 19.4 4.37 KM Plot
BLCA rs71594954 chr5:3498019 C/T 9.61E-6 404 17.4 19.92 4.37 KM Plot
BLCA rs71604579 chr5:3464533 TC/T 9.49E-6 405 17.4 19.4 4.37 KM Plot
BLCA rs72670222 chr4:119300095 A/T 1.86E-12 399 17.53 18.83 1.38 KM Plot
BLCA rs72670224 chr4:119301885 G/T 2.0E-12 398 17.53 18.15 1.38 KM Plot
BLCA rs72670225 chr4:119302167 C/T 2.0E-12 398 17.53 18.15 1.38 KM Plot
BLCA rs72670226 chr4:119304136 A/G 2.15E-12 397 17.67 18.15 1.38 KM Plot
BLCA rs72670228 chr4:119309516 T/C 1.87E-12 399 17.67 18.15 1.38 KM Plot
BLCA rs72670230 chr4:119312490 T/C 1.87E-12 399 17.67 18.15 1.38 KM Plot